Bayesian Latent Variable Models for Mixed Discrete Outcomes

David B. Dunson and Amy H. Herring

Biostatistics Branch, National Institute of Environmental Health Sciences & Department of Biostatistics, University of North Carolina at Chapel Hill

September, 2004

In studies of complex health conditions, mixtures of discrete outcomes (event time, count, binary, ordered categorical) are commonly collected. For example, studies of skin tumorigenesis record latency time prior to the first tumor, increases in the number of tumors at each week, and the occurrence of internal tumors at the time of death. Motivated by this application, we propose a general underlying Poisson variable framework for mixed discrete outcomes, accommodating dependency through an additive gamma frailty model for the Poisson means. The model has log-linear, complementary log-log, and proportional hazards forms for count, binary and discrete event time outcomes, respectively. Simple closed form expressions can be derived for the marginal expectations, variances, and correlations. Following a Bayesian approach to inference, conditionally-conjugate prior distributions are chosen that facilitate posterior computation via an MCMC algorithm. The methods are illustrated using data from a Tg.AC mouse bioassay study.

Keywords: Discrete time survival; Latent variables; Joint model; Multiple binary outcomes; Poisson counts; Proportional hazards; Random effects; Tumor multiplicity


The manuscript is available in PDF and PostScript formats.